graphify-labs/graphify

Fix

Bash command-substitution call edges

Calls made via x=$(fn) style command substitution in shell scripts are now captured as edges.

Fix

SQL tables inside transactions

CREATE TABLE statements wrapped in BEGIN/COMMIT blocks are now extracted correctly.

Fix

Small extractor fixes for PowerShell, Common Lisp, Julia, and Zig

Enum definitions in PowerShell, cross-file superclass links in Common Lisp, abstract types with supertypes in Julia, and enum/union methods in Zig are all now extracted properly.

Fix

Slice oversized PDFs before sending to the LLM

Large PDFs are now split into pieces based on their actual extracted text so they fit within token limits instead of failing.

Fix

Recover JSON from reasoning-first model replies

When an AI model puts its answer before its reasoning text, Graphify can now find and use the JSON anyway, retrying hollow responses rather than discarding them.

Fix

Export fixes for large and messy graphs

The visual graph.html export works again for large graphs, and a stray control character in a label no longer aborts the whole export.

Fix

tsconfig caches cleared between runs

Path-alias settings cached from TypeScript configs no longer leak stale results from one run into the next.

Fix

Obsidian vault adoption and wikilink resolution

Exporting into an existing Obsidian vault now keeps its existing notes instead of orphaning them, and wikilinks resolve vault-wide when a sibling-file match misses.

Fix

Git-tracked files survive .gitignore patterns

Files already tracked by Git are no longer wrongly excluded just because a .gitignore pattern would match them, and detection is faster when no .gitignore applies.

Fix

Case-only symbol collisions kept in Go

Go symbols that differ only in letter case (e.g. 'User' vs 'user') are now both preserved instead of one being dropped.

Fix

Lazy CommonJS requires retained

Dependencies loaded through lazy require() calls in JavaScript are now recorded in the dependency graph without double-counting.

Fix

Safer bash source paths and export filenames

Shell scripts can no longer use '..' paths to escape the analyzed folder, and exported filenames are budget-checked against full destination paths including multibyte characters.

Fix

Path queries respect edge direction

The path and shortest_path commands now follow the actual direction of relationships by default, giving more accurate answers.

Fix

Four silent CLI failures surfaced

Cases where the command-line tool previously reported success despite something going wrong now fail loudly.

Fix

Multi-language extractor correctness batch

Fixes landed for JavaScript, Kotlin, Swift, and SQL extraction, including Swift cross-file extension calls that were being dropped.

Fix

Retry failed extractions and show claude-cli errors

Failed AI extractions are retried automatically, and error messages from the claude-cli backend are now shown to users.

Fix

Deterministic dedup collision ranking

When duplicate node IDs collide, the tool now consistently prefers the active version over archived ones.

Fix

C# receiver typing scoped per declaration

Method-level name reuse in C# no longer causes genuine call edges to be dropped from the graph.

Fix

Tier-aware merging preserves both graph layers

Re-extracting part of a project no longer wipes out the other layer (e.g., semantic results) during a merge.

Fix

Watch mode writes a proper manifest

Watch mode now records manifest.json in the target's output folder with anchor and commit provenance, and inherits the directed-graph flag on rebuilds.

Fix

MCP server works with SDK 1.x and 2.x

The built-in server now supports both major versions of the Model Context Protocol SDK, unblocking fresh installs.

Fix

Ruby mixin targets resolved correctly

Compact and nested mixin declarations in Ruby now resolve to the right targets, eliminating phantom 'concern hub' nodes.

Fix

SQL cross-file table references

Table references across SQL files now normalize identifiers and handle sourceless stubs so links form correctly.

Fix

Go predeclared functions filtered from resolution

Built-in Go functions like len or cap are no longer mistaken for user-defined call targets.